Many rooms are named after a particular village or archaeological site and is decorated with items from that location. Some are named for the academic institutions which used to participate regularly in Frans' scholarly conferences in Na Bolom's facilities.
Every room has a private bathroom, fireplace, books, and many small details about the indigenous people of the region.

Three rooms at Na Bolom are reserved for the visitors from the Lacandon community. Free rooms and meals are offered when they are in San Cristóbal for activities or when they need medical attention. They receive this medical attention through Na Bolom's Lacandon Madical Fund.

Na Bolom offers its guests, as a courtesy, a guided visit in the museum. The personalized attention creates a warm and nice environment. The guest can feel free to walk around the beautiful gardens, take a cup of coffee and read a good book in the Library or have a nice talk with other visitors, at the same time they exchange experiences.

Wi-Fi Internet access is available in the house.